| AHEAD - Alliance for Human Epigenomics and Disease | AHEAD Task Force |
| ArrayExpress | EMBL-EBI |
| BioCarta | BioCarta LLC |
| BioGRID - Biological General Repository for Interaction Datasets | BioGRID Team |
| Biomarkers Database (last updated in August 2004) | USEPA |
| BOSS - Biomarkers of Oxidative Stress Study | NIEHS |
| CGAP - Cancer Genome Anatomy Project | NCI (National Cancer Institute), NIH |
| ChIPBase ("decoding transcription factor binding maps [...] and transcriptional regulation [...] from ChIP-Seq data") | Qu lab at Sun Yat-sen University (J. Yang) |
| CNV Project Data - Copy Number Variation Project Data | Wellcome Trust Sanger Institute, UK |
| COSMIC - Catalogue Of Somatic Mutations In Cancer | Wellcome Trust Sanger Institute, UK |
| CureTogether (a blog where "patients [...] share quantitative information on over 500 medical conditions") | CureTogether team |
| dbGaP - Database of Genotypes and Phenotypes | National Center for Biotechnology Information, NLM, NIH |
| dbSNP | National Center for Biotechnology Information, NLM, NIH |
| EADB - Estrogenic Activity Database | USFDA |
| EDKB - Endocrine Disruptor Knowledge Base | USFDA |
| ENCODE - Encyclopedia Of DNA Elements | NHGRI, NIH |
| EPA-Expo-Box - EPA’s EXPOsure toolBOX ("A Toolbox for Exposure Assessors") | USEPA |
| EPR - Environmental Polymorphisms Registry | NIEHS |
| EuPathDB - Eukaryotic Pathogen Database Resources | EuPathDB Project Team |
| ExpoCastDB - Exposure Forecaster Database | USEPA |
| GAC - Genetic Alterations in Cancer | NIEHS |
| GeMDBJ - Genome Medicine Database of Japan | SGMGP (The Study Groups of Millennium Genome Project for Alzheimer's disease, Cancer, Diabetes Mellitus, Hypertension, Asthma and Pharmacogenetics) |
| GenAge Database | HAGR - Human Ageing Genomic Resources |
| GenBank | National Center for Biotechnology Information, NLM, NIH |
| Gene Expression Atlas | EMBL-EBI |
| Gene Finder | NCI (National Cancer Institute), NIH |
| GeneLoc | Weizmann Institute of Science |
| GeneTox | NLM |
| Genomatix Suite | Genomatix Software GmbH |
| GENSAT - Gene Expression Nervous System ATlas database | Rockefeller University |
| GVS - Genome Variation Server | University of Washington |
| GWAS Catalog - Genome-Wide Association Studies Catalog | NHGRI Division of Genomic Medicine, NIH |
| GWASdb | GWASdb team |
| HapMap | International HapMap Project |
| HEP - Human Epigenome Project | HEP Consortium |
| HEROIC - High-Throughput Epigenetic Regulatory Organization in Chromatin Project | HEROIC Project Consortium |
| HGMD - Human Gene Mutation Database (integrated with Ingenuity Variant Analysis) | BIOBASE |
| HIV Molecular Immunology Database | Los Alamos National Laboratory |
| HIV Sequence database | Los Alamos National Laboratory |
| HMPDACC Data Browser (Human Microbiome Project DACC Data Portal) | NIH Human Microbiome Project DACC |
| Human DNA Polymerase Gamma Mutation Database | NIEHS |
| IARC TP53 Database | IARC, WHO |
| IRD - Influenza Research Database | IRD Project Team |
| IUPHAR-DB - International Union of Basic and Clinical Pharmacology Database | IUPHAR-DB development team |
| JSNP - Japanese Single Nucleotide Polymorphisms | University of Tokyo and the Japan Science and Technology Agency (JST) |
| KEGG - Kyoto Encyclopedia of Genes and Genomes | Kanehisa Laboratories, Japan |
| KEGG DRUG | Kanehisa Laboratories, Japan |
| KUPKB - The Kidney and Urinary Pathway Knowledge Base | INSERM, France and University of Manchester, UK |
| MeInfoText | National Taiwan University |
| MethyCancer - Database for studying human DNA Methylation and Cancer | Chinese Academy of Sciences |
| microRNA.org | |
| Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer | University Hospital, Lund, Sweden |
| NCBI GEO - NCBI Gene Expression Omnibus database | National Center for Biotechnology Information, NLM, NIH |
| NHANES - National Health and Nutrition Examination Survey | CDC |
| NHATS - National Human Adipose Tissue Survey | USEPA |
| NHEXAS - National Human Exposure Assessment Survey (project completed) | USEPA |
| NIEHS SNPs Exome Variant Server | NIEHS and University of Washington |
| NIH Human Microbiome Project (HMP) Roadmap Project | National Center for Biotechnology Information, NLM, NIH |
| NIMH-RGR Data Explorer | NIMH Center for Collaborative Genomic Studies on Mental Disorders |
| NMPDR - National Microbial Pathogen Data Resource (no longer maintained; see PATRIC) | NMPDR Project Team |
| Nonhuman Primate HIV/SIV Vaccine Trials Database | Los Alamos National Laboratory |
| OMIM - Online Mendelian Inheritance in Man ("Online Catalog of Human Genes and Genetic Disorders") | Johns Hopkins University and NCBI, NLM, NIH |
| Oncomine | Life Technologies Corporation |
| Pan Asian SNP Database | Pan-Asian SNP Consortium |
| Pathogen Portal | Pathogen Portal Project Team |
| PATRIC - Pathosystems Resource Integration Center | PATRIC Project Team |
| PD map - Parkinson’s disease map | LCSB and Hiroaki Kitano team at SBI, Tokyo |
| Progenetix ("genomic copy number aberrations in cancer") | Baudis Laboratory, University of Zurich |
| PubMeth | BioBix, Laboratory for Bioinformatics and Computational Genomics, Ghent University, Belgium |
| Reactome | Reactome team |
| RefSeq - NCBI Reference Sequence Database | National Center for Biotechnology Information, NLM, NIH |
| SCAN ("SNP and CNV Annotation Database") | The University of Chicago |
| SCan-MarK Explorer ("Sophic’s Cancer Biomarker Knowledge Environment") | Sophic Alliance Inc. |
| SKY/M-FISH and CGH Database | National Center for Biotechnology Information, NLM, NIH and National Cancer Institute, NIH |
| SMD - Stanford Microarray Database (see PUMAdb) | Stanford University |
| SNP500Cancer | SAIC-Frederick, NCI-FCRDC, MD |
| SNPinfo Web Server | NIEHS |
| StemBase (gene expression data obtained from stem cells) | Canadian Stem Cell Network |
| TB Drug Target Database | TB Drug Target Database development team |
| TEAM - Total Exposure Assessment Methodology Study | USEPA |
